| MirGeneDB ID | Lgi-Mir-1988 |
|---|
| Family name |
MIR-1988 (all species) |
|---|
| Species |
Owl limpet (Lottia gigantea) |
|---|
| MiRBase ID |
lgi-mir-1988
|
|---|
| Paralogues |
|
|---|
| Orthologues |
Hru-Mir-1988
|
|---|
| Node of Origin (locus) |
Gastropoda
|
|---|
| Node of Origin (family) |
Gastropoda
|
|---|
Genome context
(Lotgi1) |
LOTGIsca_162: 318652-318708 [+]
Ensembl
|
|---|
| Seed |
GUGGUUU |
|---|
Precursor
(pre-Mir +30nt flank) |
CAGUAUCAGCAAUUCCAAGCUGUCUUGUUCAGUGGUUUUCCGUUGCACAUGCGUACAUAGCAUGCAUGCGCAACGGGAGAUCAACGGAUAAGAUAGUUAUUUCAUCAAAAUCACCCA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
CAGUAUCAGCAAUUCCA--| AG A GUACA
AGCUGUCUUGUUC UGGUUUUCCGUUGC CAUGC \
UUGAUAGAAUAGG ACUAGAGGGCAACG GUACG U
ACCCACUAAAACUACUUUA^ CA C UACGA
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17) |
|---|
Tissue expression
|
|
|---|
| Mature sequence |
Lgi-Mir-1988_5p |
| mirBase accession | MIMAT0009729 |
|---|
| Sequence |
0- AGUGGUUUUCCGUUGCACAUGC -22
Get sequence
|
|---|
| Star sequence |
Lgi-Mir-1988_3p* |
| mirBase accession | None |
|---|
| Sequence |
35- AUGCGCAACGGGAGAUCAACGG -57
Get sequence
|
|---|
