| MirGeneDB ID | Lpo-Novel-2 |
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| Family name |
LPO-NOVEL-2 (all species) |
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| Species |
Atlantic horseshoe crab (Limulus polyphemus) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
L. polyphemus
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| Node of Origin (family) |
L. polyphemus
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Genome context
(GCF_000517525.1_Limulus_polyphemus-2.1.2_genomic) |
NW_013665707.1: 1163776-1163839 [+]
Ensembl
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| Seed |
GUAUUAC |
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Precursor
(pre-Mir +30nt flank) |
CACUAUAUUUAAGUAACACUAGUUUUACAAUGUAUUACUUGGUGACCUCUGUGUGGAAUAGAUUAACAUUACAAGGGUCACUGAGUGAUAUAAUGUAAUACUAGUGUGCGACAGCAUUCUCUCC
Get precursor sequence
|
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| Structure | 10 20 30 40 50 60
CACUAUAUUUAAGUAAC--| U A UG UC GUGGAAUA
ACUAGU UUACA UGUAUUACU GUGACC UGU G
UGAUCA AAUGU AUAUAGUGA CACUGG ACA A
CCUCUCUUACGACAGCGUG^ U A GU GA UUACAAUU
120 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17), UGUG in loop |
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Tissue expression
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| Mature sequence |
Lpo-Novel-2_5p |
| mirBase accession | None |
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| Sequence |
0- UGUAUUACUUGGUGACCUCUGU -22
Get sequence
|
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| Star sequence |
Lpo-Novel-2_3p* |
| mirBase accession | None |
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| Sequence |
42- AAGGGUCACUGAGUGAUAUAAU -64
Get sequence
|
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