| MirGeneDB ID | Mdo-Mir-1540 |
|---|
| Family name |
MIR-1540 (all species) |
|---|
| Species |
Gray short-tailed opossum (Monodelphis domestica) |
|---|
| MiRBase ID |
mdo-mir-1540b
|
|---|
| Paralogues |
|
|---|
| Orthologues |
Neu-Mir-1540
Sha-Mir-1540
|
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| Node of Origin (locus) |
Marsupialia
|
|---|
| Node of Origin (family) |
Marsupialia
|
|---|
Genome context
(monDom5_add) |
1: 580149267-580149325 [+]
UCSC
Ensembl
|
|---|
| Seed |
CAUGCGC |
|---|
Precursor
(pre-Mir +30nt flank) |
CUAGGUCAGGAAAUUCAAUGUGGUGGGGGUGAUUCCAUGGAGCAUAUGCUCUGGCUCUCUGGGGAUGGACAUGCGCUCUAUGGAAUCACCCCCGCUACAUAAGUAUCUUUAUAAUAAAG
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
CUAGGUCAGGAAAUUCA--| A CU UGGCUCU
AUGUGGUGGGGGUGAUUCCAUGGAGC UAUG C \
UACAUCGCCCCCACUAAGGUAUCUCG GUAC G C
GAAAUAAUAUUUCUAUGAA^ C AG UAGGGGU
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | No |
|---|
Tissue expression
|
|
|---|
| Star sequence |
Mdo-Mir-1540_5p* |
| mirBase accession | MIMAT0028938 |
|---|
| Sequence |
0- GAUUCCAUGGAGCAUAUGCUC -21
Get sequence
|
|---|
| Proposed targets |
TargetScanVert: mdo-miR-1540b-5p
|
|---|
| Mature sequence |
Mdo-Mir-1540_3p |
| mirBase accession | MIMAT0028939 |
|---|
| Sequence |
38- ACAUGCGCUCUAUGGAAUCAC -59
Get sequence
|
|---|
| Proposed targets |
TargetScanVert: mdo-miR-1540b-3p
|
|---|
