| MirGeneDB ID | Mgi-Novel-4 |
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| Family name |
MGI-NOVEL-4 (all species) |
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| Species |
Pacific oyster (Magallana gigas) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
C. gigas
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| Node of Origin (family) |
C. gigas
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Genome context
(CGI_GCA_000297895.1) |
scaffold370: 643284-643343 [+]
Ensembl
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| Seed |
GCACCAA |
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Precursor
(pre-Mir +30nt flank) |
UUUGUUACAUGAAUGAAGGAAAUGUGGACCCUUGGCACAAUGUUGUGUGUAGACUACAGCUUUCUAUCUGCACCAAUAUGAUGCCAGGCGAUCCAUGUUUUUGAUAGCGCCAACUUAUCU
Get precursor sequence
|
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| Structure | 10 20 30 40 50
UUUGUUACAUGAAUGAA- CC-| CA U CUACAG
GGAAAUGUGGA CUUGGCA AUGUUG GUGUAGA \
UUUUUGUACCU GGACCGU UAUAAC CACGUCU C
UCUAUUCAACCGCGAUAG AGC^ AG - AUCUUU
. 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
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| 3' NTU |
No
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
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| A- |
D- |
D- |
F- |
L- |
Ea |
Eg |
Fe |
Gi |
Ha |
He |
Ju |
La |
Ma |
Ma |
Ma |
Pe |
Re |
Sp |
Um |
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| Star sequence |
Mgi-Novel-4_5p* |
| mirBase accession | None |
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| Sequence |
0- CUUGGCACAAUGUUGUGUGUAGA -23
Get sequence
|
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| Mature sequence |
Mgi-Novel-4_3p |
| mirBase accession | None |
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| Sequence |
38- UGCACCAAUAUGAUGCCAGGCG -60
Get sequence
|
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