| MirGeneDB ID | Mgi-Novel-7 |
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| Family name |
MGI-NOVEL-7 (all species) |
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| Species |
Pacific oyster (Magallana gigas) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
C. gigas
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| Node of Origin (family) |
C. gigas
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Genome context
(CGI_GCA_000297895.1) |
scaffold705: 16090-16154 [+]
Ensembl
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| Seed |
GGUUAAG |
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Precursor
(pre-Mir +30nt flank) |
AUCGACCAAAAAUUCCAGCAUAAAAGCCAGAGGUUAAGAAAUUUAGGAGUCUUUUAGUAAUGAAAUGCUGUAGACUUCAAUUUUCUUUUAUCUCUGGUGAAAAAAUCAACUACCCGGUACUUCCA
Get precursor sequence
|
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| Structure | 10 20 30 40 50 60
AUCGACCAAAAAUUCCAGCAUAAAA-- U-| U A UUUAGUAAU
GCCAGAGGU AAGAAA UU GGAGUCU \
UGGUCUCUA UUCUUU AA CUUCAGA G
ACCUUCAUGGCCCAUCAACUAAAAAAG UU^ U - UGUCGUAAA
120 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
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| Comment | There is a second Dicer cut +1 on both arms. |
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| 3' NTU |
No
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| Motifs | No |
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Tissue expression
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| A- |
D- |
D- |
F- |
L- |
Ea |
Eg |
Fe |
Gi |
Ha |
He |
Ju |
La |
Ma |
Ma |
Ma |
Pe |
Re |
Sp |
Um |
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| Mature sequence |
Mgi-Novel-7_5p |
| mirBase accession | None |
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| Sequence |
0- AGGUUAAGAAAUUUAGGAGUCU -22
Get sequence
|
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| Star sequence |
Mgi-Novel-7_3p* |
| mirBase accession | None |
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| Sequence |
43- ACUUCAAUUUUCUUUUAUCUCU -65
Get sequence
|
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