| MirGeneDB ID | Neu-Mir-1542 |
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| Family name |
MIR-1542 (all species) |
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| Species |
Tammar Wallaby (Notamacropus eugenii) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
Mdo-Mir-1542
Sha-Mir-1542
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| Node of Origin (locus) |
Marsupialia
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| Node of Origin (family) |
Marsupialia
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Genome context
(GCA_028372415.1_mMacEug1.pri) |
CM051815.1: 290443429-290443490 [-]
UCSC
Ensembl
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| Seed |
AUUGAUC |
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Precursor
(pre-Mir +30nt flank) |
AUCGACGGAUCUCCAAAGCCUAGUCCAGUGCCUGGCACAUAGGAGCUUCAUAAAUGUGUGUUCAUUUAUUUAUUGAUCUCCAAUGCCUAGCACUGUGCCUGGCAAUAAGAACUUCAUAAAGG
Get precursor sequence
|
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| Structure | 10 20 30 40 50 60
AUCGACGGAUCUCCAAA--| UA UC CU CAUA CU - UGUGUG
GCC G CAGUGC GGCA GGAG UCA UAAA U
CGG C GUCACG CCGU CCUC AGU AUUU U
GGAAAUACUUCAAGAAUAA^ UC GU AU AA-- U- U AUUUAC
120 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
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| 3' NTU |
No
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| Motifs | UGUG in loop |
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Tissue expression
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| Br |
Ce |
Fi |
Li |
Mi |
Mi |
Mi |
Mi |
Mi |
Ov |
Se |
Se |
Te |
Te |
Te |
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| Star sequence |
Neu-Mir-1542_5p* (predicted) |
| mirBase accession | None |
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| Sequence |
0- CCUGGCACAUAGGAGCUUCAUAAA -24
Get sequence
|
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| Mature sequence |
Neu-Mir-1542_3p |
| mirBase accession | None |
|---|
| Sequence |
40- UAUUGAUCUCCAAUGCCUAGCA -62
Get sequence
|
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