| MirGeneDB ID | Oan-Mir-1339 |
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| Family name |
MIR-1339 (all species) |
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| Species |
Platypus (Ornithorhynchus anatinus) |
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| MiRBase ID |
oan-mir-1339
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
O. anatinus
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| Node of Origin (family) |
O. anatinus
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Genome context
(mOrnAna1.p.v1_plustraces) |
NC_041734.1: 17894855-17894915 [+]
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| Seed |
GAUGCAA |
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Precursor
(pre-Mir +30nt flank) |
AUGAUGAAAGCACUACUAAGAACUAGAUUCAGAUGCAAGAGAAUUUUCAGUUGUCAGUUUGGGUUGACUGAAAACUCAUUUUGCAUGCAGAAUCCAGUUUGAAUAUCAAAUCCGCCACAGA
Get precursor sequence
|
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| Structure | 10 20 30 40 50
AUGAUGAAAGCACUACUAA-- A AG- -| A UGUCAGU
GAACU GAUUC AUGCAAGA GA UUUUCAGU \
UUUGA CUAAG UACGUUUU CU AAAAGUCA U
AGACACCGCCUAAACUAUAAG C ACG A^ C GUUGGGU
. 110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
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| Comment | There is a second Dicer cut -1 on the 3p arm. |
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| 3' NTU |
No
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| Motifs | UGUG in loop |
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Tissue expression
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| Mature sequence |
Oan-Mir-1339_5p |
| mirBase accession | MIMAT0006861 |
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| Sequence |
0- AGAUGCAAGAGAAUUUUCAGU -21
Get sequence
|
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| Star sequence |
Oan-Mir-1339_3p* |
| mirBase accession | MIMAT0006862 |
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| Sequence |
38- UGAAAACUCAUUUUGCAUGCAGA -61
Get sequence
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