| MirGeneDB ID | Oan-Mir-1340 |
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| Family name |
MIR-1340 (all species) |
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| Species |
Platypus (Ornithorhynchus anatinus) |
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| MiRBase ID |
oan-mir-1340
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
O. anatinus
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| Node of Origin (family) |
O. anatinus
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Genome context
(mOrnAna1.p.v1_plustraces) |
NC_041739.1: 1264465-1264519 [-]
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| Seed |
GCUGUCC |
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Precursor
(pre-Mir +30nt flank) |
CGUACGUUUGCACACACCUAUGGUGUCGUCUUCCAAUCCAGAGGACAGCCAGAGAGAGAGACCUGCUGUCCUUUGUAUUAGGAGAUAACAUCACGGGCAGUAAAGUUGUGAGCGC
Get precursor sequence
|
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| Structure | 10 20 30 40 50
CGUACGUUUGCACACAC--|UA CG C C C AGAG
C UGGUGU UCUUC AAU CAGAGGACAGC AG A
G ACUACA AGAGG UUA GUUUCCUGUCG UC G
CGCGAGUGUUGAAAUGACG^GC AU A U - CAGA
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| Comment | There is a second Drosha cut -1 on both arms. |
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| 3' NTU |
No
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| Motifs | No |
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Tissue expression
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| Star sequence |
Oan-Mir-1340_5p* |
| mirBase accession | MIMAT0006868 |
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| Sequence |
0- UUCCAAUCCAGAGGACAGCCAGA -23
Get sequence
|
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| Mature sequence |
Oan-Mir-1340_3p |
| mirBase accession | MIMAT0006869 |
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| Sequence |
33- UGCUGUCCUUUGUAUUAGGAGA -55
Get sequence
|
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