| MirGeneDB ID | Obi-Novel-1 |
|---|
| Family name |
OBI-NOVEL-1 (all species) |
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| Species |
California two-spot octopus (Octopus bimaculoides) |
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| MiRBase ID |
|
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
O. bimaculoides
|
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| Node of Origin (family) |
O. bimaculoides
|
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Genome context
(PRJNA270931_OBI) |
KQ418023: 53012-53069 [-]
Ensembl
|
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| Seed |
UGUGUCU |
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Precursor
(pre-Mir +30nt flank) |
CUGGUGUUUUGAAACUUGUUGCUCUCAUUGUUGUGUCUAUUGCUAAGCUAUGUUUGCCUAGUCCACUUAGCUGUAAAUAGGCACAAUGUGGAAGGAACAACUCACUACUCUCAGUUGC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
CUGGUGUUUUGAAACUU---| G CU U GCUA U UUGCC
GUU CU CAU GUUGUGUCUAUU AGCUA GU \
CAA GA GUG UAACACGGAUAA UCGAU CA U
CGUUGACUCUCAUCACUCAA^ G AG - AUG- U CCUGA
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
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Tissue expression
|
|
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| Mature sequence |
Obi-Novel-1_5p |
| mirBase accession | None |
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| Sequence |
0- UUGUGUCUAUUGCUAAGCUAUGU -23
Get sequence
|
|---|
| Star sequence |
Obi-Novel-1_3p* |
| mirBase accession | None |
|---|
| Sequence |
36- UUAGCUGUAAAUAGGCACAAUG -58
Get sequence
|
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