| MirGeneDB ID | Ovu-Mir-12548 |
|---|
| Family name |
MIR-12548 (all species) |
|---|
| Species |
Common octopus (Octopus vulgaris) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
|
|---|
| Orthologues |
Esc-Mir-12548
Obi-Mir-12548
|
|---|
| Node of Origin (locus) |
Coleoidea
|
|---|
| Node of Origin (family) |
Coleoidea
|
|---|
Genome context
(GCA_003957725.1_ASM395772v1_OVU) |
RXHP01066201.1: 65212-65271 [+]
Ensembl
|
|---|
| Seed |
CCCUGCC |
|---|
Precursor
(pre-Mir +30nt flank) |
GUCACGUGCAAAAGUGUGCCUUUUCACUGGUCCCUGCCUCACUCUAGUUACAUGUACACUCUGCAAUGUAGCUGGCUGAGACAAGAGACCAGGCGUGGCCCUAAUCACACUCUUUGUUCG
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
GUCACGUGCAAAAGUGU----| UUUUCA C GC- CU GUACA
GCC CUGGUC CU CUCA CUAGUUACAU C
CGG GACCAG GA GAGU GGUCGAUGUA U
GCUUGUUUCUCACACUAAUCC^ UGCG-- A ACA C- ACGUC
. 110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| Comment | There is a second Dicer cut -1 on both arms. |
|---|
| 3' NTU |
No
|
|---|
| Motifs | UG at 5p(-14) |
|---|
Tissue expression
|
| Ax |
Ce |
Fr |
He |
In |
Op |
Op |
Pe |
Po |
Re |
Sk |
St |
Su |
Su |
Te |
Ve |
Vi |
Wh |
| |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|---|
| Mature sequence |
Ovu-Mir-12548_5p |
| mirBase accession | None |
|---|
| Sequence |
0- UCCCUGCCUCACUCUAGUUACAU -23
Get sequence
|
|---|
| Star sequence |
Ovu-Mir-12548_3p* |
| mirBase accession | None |
|---|
| Sequence |
38- UAGCUGGCUGAGACAAGAGACC -60
Get sequence
|
|---|
