| MirGeneDB ID | Ovu-Mir-12552 |
|---|
| Family name |
MIR-12552 (all species) |
|---|
| Species |
Common octopus (Octopus vulgaris) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
|
|---|
| Orthologues |
Esc-Mir-12552
Obi-Mir-12552
|
|---|
| Node of Origin (locus) |
Coleoidea
|
|---|
| Node of Origin (family) |
Coleoidea
|
|---|
Genome context
(GCA_003957725.1_ASM395772v1_OVU) |
RXHP01058187.1: 57722-57779 [-]
Ensembl
|
|---|
| Seed |
AAAAUUC |
|---|
Precursor
(pre-Mir +30nt flank) |
UUUCUUCAUUUAUUGAUUGUAGCGCAGUCCUAAAAUUCAAGUCUGAGGGUUCUUUUAUUAAAUUGAACUUUCUCACUUGAAAUUUUGGCCUUCUCUAUCAACAUGCAGCACACGUAUA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
UUUCUUCAUUUAUUGAUU--| CGC U U A CU UUUUA
GUAG AG CC AAA UUCAAGU GAGGGUUC U
UAUC UC GG UUU AAGUUCA CUUUCAAG U
AUAUGCACACGACGUACAAC^ UCU C U A CU UUAAA
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
Unknown
|
|---|
| Motifs | CNNC at 3p(+17) |
|---|
Tissue expression
|
| Ax |
Ce |
Fr |
He |
In |
Op |
Op |
Pe |
Po |
Re |
Sk |
St |
Su |
Su |
Te |
Ve |
Vi |
Wh |
| |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|---|
| Mature sequence |
Ovu-Mir-12552_5p |
| mirBase accession | None |
|---|
| Sequence |
0- UAAAAUUCAAGUCUGAGGGUUCU -23
Get sequence
|
|---|
| Star sequence |
Ovu-Mir-12552_3p* (predicted) |
| mirBase accession | None |
|---|
| Sequence |
35- AACUUUCUCACUUGAAAUUUUGG -58
Get sequence
|
|---|
