| MirGeneDB ID | Pab-Mir-1343 |
|---|
| Family name |
MIR-1343 (all species) |
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| Species |
Sumatran orangutan (Pongo abelii) |
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| MiRBase ID |
|
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| Paralogues |
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| Orthologues |
Bta-Mir-1343
Cfa-Mir-1343
Cja-Mir-1343
Cpo-Mir-1343
Dno-Mir-1343
Eca-Mir-1343
Hsa-Mir-1343
Laf-Mir-1343
Ocu-Mir-1343
|
|---|
| Node of Origin (locus) |
Eutheria
|
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| Node of Origin (family) |
Eutheria
|
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Genome context
(GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces) |
CM054688.2: 32281135-32281193 [-]
UCSC
Ensembl
|
|---|
| Seed |
UCCUGGG |
|---|
Precursor
(pre-Mir +30nt flank) |
GGAACAGGACGAUGAUGCUGGCGUCGGUGCUGGGGAGCGGCCCCCGGGCGGGCCUCUGCUCUGGCCCCUCCUGGGGCCCGCACUCUCGCUCCGGGCCCGCUCCACUUCUGCCACUGACA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
GGAACAGGACGAUGAUGCU---| G U U A C C CCUCUG
GGC UCGG GC GGGG GCGG CCCCGGG GGG \
CCG GGCC CG UCUC CGCC GGGGUCC CCC C
ACAGUCACCGUCUUCACCUCGC^ - U C A C U CGGUCU
110 100 90 80 70 60 |
|---|
| Deep sequencing |
|
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| 3' NTU |
Unknown
|
|---|
| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
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| Star sequence |
Pab-Mir-1343_5p* (predicted) |
| mirBase accession | None |
|---|
| Sequence |
0- UGGGGAGCGGCCCCCGGGCGGG -22
Get sequence
|
|---|
| Mature sequence |
Pab-Mir-1343_3p (predicted) |
| mirBase accession | None |
|---|
| Sequence |
37- CUCCUGGGGCCCGCACUCUCGC -59
Get sequence
|
|---|
