| MirGeneDB ID | Pab-Mir-3617 |
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| Family name |
MIR-3617 (all species) |
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| Species |
Sumatran orangutan (Pongo abelii) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
Hsa-Mir-3617
Mml-Mir-3617
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| Node of Origin (locus) |
Catarrhini
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| Node of Origin (family) |
Catarrhini
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Genome context
(GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces) |
CM054700.2: 49985320-49985382 [-]
UCSC
Ensembl
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| Seed |
AAGACAU |
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Precursor
(pre-Mir +30nt flank) |
AAGAGGGAAUUGUCUUACUCAAGGUCAUAGAAAGACAUAGUUGCAAGAUGGGAUUAGAAACCAUAUGUCUCAUCAGCACCCUAUGUGCUUUCUCUGCCCUGGGAGCACACUCCAUUUAGCAGG
Get precursor sequence
|
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| Structure | 10 20 30 40 50 60
AAGAGGGAAUUGUCUUA- A- U U - U-| AA AUUAGAA
CUC AGG CA AGAAAG ACAUAG UGC GAUGGG A
GAG UCC GU UCUUUC UGUAUC ACG CUACUC C
GGACGAUUUACCUCACAC GG C C G CC^ A- UGUAUAC
120 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
Unknown
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
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| Mature sequence |
Pab-Mir-3617_5p (predicted) |
| mirBase accession | None |
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| Sequence |
0- AAAGACAUAGUUGCAAGAUGGG -22
Get sequence
|
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| Star sequence |
Pab-Mir-3617_3p* (predicted) |
| mirBase accession | None |
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| Sequence |
40- CAUCAGCACCCUAUGUGCUUUCU -63
Get sequence
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