| MirGeneDB ID | Pab-Mir-3909 |
|---|
| Family name |
MIR-3909 (all species) |
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| Species |
Sumatran orangutan (Pongo abelii) |
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| MiRBase ID |
|
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| Paralogues |
|
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| Orthologues |
Hsa-Mir-3909
Mml-Mir-3909
|
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| Node of Origin (locus) |
Catarrhini
|
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| Node of Origin (family) |
Catarrhini
|
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Genome context
(GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces) |
CM068844.1: 41873531-41873592 [+]
UCSC
Ensembl
|
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| Seed |
GUCCUCU |
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Precursor
(pre-Mir +30nt flank) |
GGUUUGCUGUUGCGCCGUCAUUCCUCUGGGGAGCAGGCCCCGGGGGACAGGGAAAAGCACACAAGGAACUUGUCCUCUAGGGCCUGCAGUCUCACGGGAGAGUAACAUGCACCUGGACCGCC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
GGUUUGCUGUUGCGCCGUC CU - --| CG GAAAAGCA
AUUC CUG GGGA GCAGGCCC GGGGACAGG \
UGAG GGC CUCU CGUCCGGG CUCCUGUUC C
CCGCCAGGUCCACGUACAA AG A GA^ AU AAGGAACA
120 110 100 90 80 70 |
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| Deep sequencing |
|
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| 3' NTU |
Unknown
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
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| Star sequence |
Pab-Mir-3909_5p* (predicted) |
| mirBase accession | None |
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| Sequence |
0- GAGCAGGCCCCGGGGGACAGG -21
Get sequence
|
|---|
| Mature sequence |
Pab-Mir-3909_3p (predicted) |
| mirBase accession | None |
|---|
| Sequence |
40- UGUCCUCUAGGGCCUGCAGUCU -62
Get sequence
|
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