| MirGeneDB ID | Pab-Mir-561 |
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| Family name |
MIR-561 (all species) |
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| Species |
Sumatran orangutan (Pongo abelii) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
Cja-Mir-561
Hsa-Mir-561
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| Node of Origin (locus) |
Simiiformes
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| Node of Origin (family) |
Simiiformes
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Genome context
(GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces) |
ref|NC_036905.1|:74764293-74764556: 104-160 [+]
UCSC
Ensembl
|
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| Seed |
UCAAGGA |
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Precursor
(pre-Mir +30nt flank) |
UGAAACUUCAUCCACCAGUCCUCCAGGAACAUCAAGGAUCUUAAACUUUGCCAGAGCUACAAAGGCAAAGUUUAAGAUCCUUGAAGUUCCUGGGGGAACCAUGGAUGGCUAUCUUUA
Get precursor sequence
|
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| Structure | 10 20 30 40 50
UGAAACUUCAUCCACCAG--| A AGAGC
UCCUCCAGGAAC UCAAGGAUCUUAAACUUUGCC \
AGGGGGUCCUUG AGUUCCUAGAAUUUGAAACGG U
AUUUCUAUCGGUAGGUACCA^ A AAACA
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| Comment | Not in assembly but in trace archives. |
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| 3' NTU |
Unknown
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| Motifs | No |
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Tissue expression
|
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| Mature sequence |
Pab-Mir-561_5p |
| mirBase accession | None |
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| Sequence |
0- AUCAAGGAUCUUAAACUUUGCC -22
Get sequence
|
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| Star sequence |
Pab-Mir-561_3p* (predicted) |
| mirBase accession | None |
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| Sequence |
35- CAAAGUUUAAGAUCCUUGAAGU -57
Get sequence
|
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