| MirGeneDB ID | Pab-Mir-628 |
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| Family name |
MIR-628 (all species) |
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| Species |
Sumatran orangutan (Pongo abelii) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
Bta-Mir-628
Cfa-Mir-628
Cja-Mir-628
Dno-Mir-628
Eca-Mir-628
Ete-Mir-628
Hsa-Mir-628
Laf-Mir-628
Mml-Mir-628
Mmr-Mir-628
Ocu-Mir-628
|
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| Node of Origin (locus) |
Eutheria
|
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| Node of Origin (family) |
Eutheria
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Genome context
(GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces) |
CM054695.2: 58385756-58385816 [-]
UCSC
Ensembl
|
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| Seed |
UGCUGAC |
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Precursor
(pre-Mir +30nt flank) |
UAUCGGAGAUAGCUGUUGUGUCACUUCCUCAUGCUGACAUAUUUACUAGAGGGUAAAAUUAAUAACCUUCUAGUAAGAGUGGCAGUCGAAGGGAAGGGCUCAUCUGACUUCUGGAAACCUA
Get precursor sequence
|
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| Structure | 10 20 30 40 50
UAUCGGAGAUAGCUGUU---|U A CA - A A GUAAAA
G GUC CUUCCU UG CUG CAU UUUACUAGAGG U
C CGG GAAGGG GC GAC GUG GAAUGAUCUUC U
AUCCAAAGGUCUUCAGUCUA^U - AA U G A CAAUAA
. 110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
Unknown
|
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| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
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Tissue expression
|
|
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| Mature sequence |
Pab-Mir-628_5p |
| mirBase accession | None |
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| Sequence |
0- AUGCUGACAUAUUUACUAGAGG -22
Get sequence
|
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| Star sequence |
Pab-Mir-628_3p* |
| mirBase accession | None |
|---|
| Sequence |
38- UCUAGUAAGAGUGGCAGUCGAAG -61
Get sequence
|
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