| MirGeneDB ID | Pau-Mir-5045 |
|---|
| Family name |
MIR-5045 (all species) |
|---|
| Species |
Horseshoe worm (Phoronis australis) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
|
|---|
| Orthologues |
Lan-Mir-5045
|
|---|
| Node of Origin (locus) |
Lophophorata
|
|---|
| Node of Origin (family) |
Lophophorata
|
|---|
Genome context
(Phoronis_australis_GCA_002633005) |
NMRA01000039.1: 397719-397776 [-]
Ensembl
|
|---|
| Seed |
AGAGAUU |
|---|
Precursor
(pre-Mir +30nt flank) |
UUGCAACACCAACUGAUUCCUAAUGUGCGGAGUCUAAAAGCUAGUCUCUAGAGAUAUCCAACCUUCUAGAGAUUUUCUUUUGGUCUACAUACACAAGGAAUUACCACCUGAAACUUCC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
UUGCAACACCAACUGAU--| AA CGG U CU GAUAU
UCCU UGUG AG CUAAAAG AGUCUCUAGA C
AGGA ACAU UC GGUUUUC UUAGAGAUCU C
CCUUCAAAGUCCACCAUUA^ AC ACA U UU UCCAA
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17) |
|---|
Tissue expression
|
|
|---|
| Star sequence |
Pau-Mir-5045_5p* (predicted) |
| mirBase accession | None |
|---|
| Sequence |
0- AGUCUAAAAGCUAGUCUCUAGA -22
Get sequence
|
|---|
| Mature sequence |
Pau-Mir-5045_3p |
| mirBase accession | None |
|---|
| Sequence |
36- UAGAGAUUUUCUUUUGGUCUAC -58
Get sequence
|
|---|
