| MirGeneDB ID | Pma-Mir-132-o3 |
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| Family name |
MIR-132 (all species) |
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| Species |
Sea Lamprey (Petromyzon marinus) |
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| MiRBase ID |
pma-mir-132
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| Paralogues |
Pma-Mir-132-o1
Pma-Mir-132-o2
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| Orthologues |
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| Node of Origin (locus) |
P. marinus
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| Node of Origin (family) |
Vertebrata
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Genome context
(GCF_010993605.1_kPetMar1.pri_genomic) |
PIZI01000127.1: 315360-315423 [-]
UCSC
Ensembl
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| Seed |
AACAGUC |
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Precursor
(pre-Mir +30nt flank) |
GCCGCGCUUGGUUUCUUCGCUGCCCGGGCGCCCGUGGCGUUAGACUGAUGCUGUGAGGCUCCACAGAGGCAGUAACAGUCUACAGCCAUGGACACCCGGCGGCGGGCUGCUCCACGGUGGGCGG
Get precursor sequence
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| Structure | 10 20 30 40 50 60
GCCGCGCUUGGUUUCUU---| C CGC GU A GUGAGGCU
CGCUGCC GGG CCGUGGC UAGACUG UGCU C
GCGGCGG CCC GGUACCG AUCUGAC AUGA C
GGCGGGUGGCACCUCGUCGG^ - ACA AC A CGGAGACA
120 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
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| Comment | Not in assembly but in trace archive. |
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| 3' NTU |
No
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| Motifs | CNNC at 3p(+17), UGUG in loop |
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Tissue expression
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| Br |
Gi |
Gu |
He |
Ki |
La |
Li |
Mo |
Mu |
Sk |
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| Star sequence |
Pma-Mir-132-o3_5p* |
| mirBase accession | MIMAT0019458 |
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| Sequence |
0- CCCGUGGCGUUAGACUGAUGCU -22
Get sequence
|
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| Mature sequence |
Pma-Mir-132-o3_3p |
| mirBase accession | MIMAT0019459 |
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| Sequence |
42- UAACAGUCUACAGCCAUGGACA -64
Get sequence
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