| MirGeneDB ID | Pma-Mir-203-o1 |
|---|
| Family name |
MIR-203 (all species) |
|---|
| Species |
Sea Lamprey (Petromyzon marinus) |
|---|
| MiRBase ID |
pma-mir-203a
|
|---|
| Paralogues |
Pma-Mir-203-o2-v1
Pma-Mir-203-o3-v1
|
|---|
| Orthologues |
Dre-Mir-203-P1-v1
Gmo-Mir-203-P1-v1
Lch-Mir-203
Mal-Mir-203-P1-v1
Spt-Mir-203
|
|---|
| Node of Origin (locus) |
P. marinus
|
|---|
| Node of Origin (family) |
Vertebrata
|
|---|
Genome context
(GCF_010993605.1_kPetMar1.pri_genomic) |
NC_046101.1: 7616657-7616716 [-]
UCSC
Ensembl
|
|---|
| Seed |
UGAAAUG |
|---|
Precursor
(pre-Mir +30nt flank) |
ACGAGGACCAAGUCUCUGCUUCCCGGGCCCAGUGGUUCUCAUCAGUUCAACAGUUCUUUGGAGAAAUUGUGAAAUGUUUAGGACCACUGGGACCGGAGGGGCCUCUCCGUCAAAGCCAAG
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
ACGAGGACCAAGUCUCU- -| G CAU G A UUCUUU
GCUUC CCGG CCCAGUGGUUCU CA UUCA CAG \
CGGGG GGCC GGGUCACCAGGA GU AAGU GUU G
GAACCGAAACUGCCUCUC A^ A UUU A - AAAGAG
. 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
|---|
Tissue expression
|
| Br |
Gi |
Gu |
He |
Ki |
La |
Li |
Mo |
Mu |
Sk |
| |
|
|
|
|
|
|
|
|
|
|
|---|
| Star sequence |
Pma-Mir-203-o1_5p* |
| mirBase accession | MIMAT0019511 |
|---|
| Sequence |
0- AGUGGUUCUCAUCAGUUCAACAG -23
Get sequence
|
|---|
| Mature sequence |
Pma-Mir-203-o1_3p |
| mirBase accession | MIMAT0019512 |
|---|
| Sequence |
38- GUGAAAUGUUUAGGACCACUGG -60
Get sequence
|
|---|
