| MirGeneDB ID | Pma-Mir-4541 |
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| Family name |
MIR-4541 (all species) |
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| Species |
Sea Lamprey (Petromyzon marinus) |
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| MiRBase ID |
pma-mir-4541
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| Paralogues |
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| Orthologues |
Cmi-Mir-4541
Sto-Mir-4541
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| Node of Origin (locus) |
Vertebrata
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| Node of Origin (family) |
Vertebrata
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Genome context
(GCF_010993605.1_kPetMar1.pri_genomic) |
NC_046136.1: 4815002-4815062 [+]
UCSC
Ensembl
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| Seed |
AUAUUUA |
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Precursor
(pre-Mir +30nt flank) |
AACCAGCACAGCCUCUGCUUGGCUCAGAGCAGCUGGUCGCGUCUAAGUACGUGUGUCUGCAUCGUCGCACAUAUUUAGCACGACUGGCUGUUCUGUACAGGCGCCUGCUGGCGGACUUGCG
Get precursor sequence
|
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| Structure | 10 20 30 40 50 60
AACCAGCACAGCCUCUG---| GCU UG C U C UGUCUG
CUUG CAGAGCAGC GUCG G CUAAGUA GUG C
GGAC GUCUUGUCG CAGC C GAUUUAU CAC A
GCGUUCAGGCGGUCGUCCGC^ AU- GU A - A GCUGCU
. 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
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| Motifs | UGUG in loop |
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Tissue expression
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| Br |
Gi |
Gu |
He |
Ki |
La |
Li |
Mo |
Mu |
Sk |
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| Star sequence |
Pma-Mir-4541_5p* |
| mirBase accession | None |
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| Sequence |
0- AGCUGGUCGCGUCUAAGUACGUG -23
Get sequence
|
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| Mature sequence |
Pma-Mir-4541_3p |
| mirBase accession | MIMAT0019569 |
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| Sequence |
39- CAUAUUUAGCACGACUGGCUGU -61
Get sequence
|
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