| MirGeneDB ID | Pmi-Mir-2012 |
|---|
| Family name |
MIR-2012 (all species) |
|---|
| Species |
Bat starfish (Patiria miniata) |
|---|
| MiRBase ID |
pmi-mir-2012
|
|---|
| Paralogues |
|
|---|
| Orthologues |
Pfl-Mir-2012
Sko-Mir-2012
Spu-Mir-2012
|
|---|
| Node of Origin (locus) |
Ambulacraria
|
|---|
| Node of Origin (family) |
Ambulacraria
|
|---|
Genome context
(Pmin1) |
JH772886.1: 37288-37347 [+]
|
|---|
| Seed |
AGUACUG |
|---|
Precursor
(pre-Mir +30nt flank) |
UAUUGCUCCUUCUUCCUUCCCUUCCCUAGUUAGUACUGGCAUAUGGACAUUCGUGUGACAUGGAACCAAUGUUCAGAUGCCCGUACUGUCUGGUGUUGGGUAUGCUCACACUGCUAAGCU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
UAUUGCUCCUUCUUCCUU--| UUCC U U A CGUGUGA
CCC CUAG UAGUAC GGCAU UGGACAUU C
GGG GGUC GUCAUG CCGUA ACUUGUAA A
UCGAAUCGUCACACUCGUAU^ UUGU U C G CCAAGGU
. 110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | UGUG in loop |
|---|
Tissue expression
|
|
|---|
| Mature sequence |
Pmi-Mir-2012_5p |
| mirBase accession | MIMAT0032187 |
|---|
| Sequence |
0- UAGUACUGGCAUAUGGACAUUC -22
Get sequence
|
|---|
| Star sequence |
Pmi-Mir-2012_3p* |
| mirBase accession | None |
|---|
| Sequence |
38- AUGUUCAGAUGCCCGUACUGUC -60
Get sequence
|
|---|
