| MirGeneDB ID | Sha-Mir-12404 |
|---|
| Family name |
MIR-12404 (all species) |
|---|
| Species |
Tasmanian devil (Sarcophilus harrisii) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
|
|---|
| Orthologues |
Mdo-Mir-12404
|
|---|
| Node of Origin (locus) |
Marsupialia
|
|---|
| Node of Origin (family) |
Marsupialia
|
|---|
Genome context
(DEVIL_add) |
GL867612.1: 601581-601639 [+]
UCSC
Ensembl
|
|---|
| Seed |
GGUGAAG |
|---|
Precursor
(pre-Mir +30nt flank) |
CUUACCAGAGGCUCCUUCUGAGGCCUACGGAGGUGAAGUGACUUGCCAAGGUUGUUCAUGUGUUAUCUUAAGCAAGUCCCUUCCCCUCUCUACCCUCAGUAUUCUCUUCCAUAAAUUGA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
CUUACCAGAGGCUCCUU---| CCUAC U U C- UGUUC
CUGAGG GGAGG GAAG GACUUGC AAGGU A
GACUCC UCUCC CUUC CUGAACG UUCUA U
AGUUAAAUACCUUCUCUUAU^ CAUC- C C AA UUGUG
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17), UGUG in loop |
|---|
Tissue expression
|
| Bo |
Br |
He |
Ki |
Li |
Ly |
Pa |
Sk |
Sp |
Te |
| |
|
|
|
|
|
|
|
|
|
|
|---|
| Mature sequence |
Sha-Mir-12404_5p |
| mirBase accession | None |
|---|
| Sequence |
0- AGGUGAAGUGACUUGCCAAGGU -22
Get sequence
|
|---|
| Star sequence |
Sha-Mir-12404_3p* |
| mirBase accession | None |
|---|
| Sequence |
36- CUUAAGCAAGUCCCUUCCCCUCU -59
Get sequence
|
|---|
