| MirGeneDB ID | Sha-Novel-4 |
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| Family name |
SHA-NOVEL-4 (all species) |
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| Species |
Tasmanian devil (Sarcophilus harrisii) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
S. harrisii
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| Node of Origin (family) |
S. harrisii
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Genome context
(DEVIL_add) |
GL849918.1: 206081-206139 [-]
UCSC
Ensembl
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| Seed |
GGCUAAG |
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Precursor
(pre-Mir +30nt flank) |
UUCCAAAAGAUGUACUGCUUGCCUUGGAGCUGGCUAAGGAUUUAGGGAAGGAGCUAAAUUAGGACUCUUCUCUUCAUCCAAAGCCUAGUUCCAACAUGGCUCUCCAUCUUGUCUGGCAC
Get precursor sequence
|
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| Structure | 10 20 30 40 50
UUCCAAAAGAUGUACUGCUU --- -| AA UU AGCUAA
GCC UUGGAGCU GGCU GGAU AGGGAAGG A
CGG AACCUUGA CCGA CCUA UCUCUUCU U
CACGGUCUGUUCUACCUCU- UAC U^ AA CU CAGGAU
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
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| Comment | Derived for Dasyuridae. |
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| 3' NTU |
No
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
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| Bo |
Br |
He |
Ki |
Li |
Ly |
Pa |
Sk |
Sp |
Te |
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| Mature sequence |
Sha-Novel-4_5p |
| mirBase accession | None |
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| Sequence |
0- UGGCUAAGGAUUUAGGGAAGG -21
Get sequence
|
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| Star sequence |
Sha-Novel-4_3p* |
| mirBase accession | None |
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| Sequence |
37- UUCUCUUCAUCCAAAGCCUAGU -59
Get sequence
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