| MirGeneDB ID | Sha-Novel-5 |
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| Family name |
SHA-NOVEL-5 (all species) |
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| Species |
Tasmanian devil (Sarcophilus harrisii) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
S. harrisii
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| Node of Origin (family) |
S. harrisii
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Genome context
(DEVIL_add) |
GL867582.1: 180996-181052 [+]
UCSC
Ensembl
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| Seed |
UUGGGGG |
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Precursor
(pre-Mir +30nt flank) |
GCUAAGGAGUCUGGGAUUUGUCCUGUAAACUUUGGGGGGUGAUCUUGGACAUCAGAAUAGGAUGGAUGCCAGGAUCUCUCUCUUCAGGGCCCUGCCAGAAGCGCCUCACCUUUGGCC
Get precursor sequence
|
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| Structure | 10 20 30 40 50
GCUAAGGAGUCUGGGAUUU--------| UAAACUUU U A AGAAU
GUCCUG GGGGGG GAUCUUGG CAUC \
CGGGAC UCUCUC CUAGGACC GUAG A
CCGGUUUCCACUCCGCGAAGACCGUCC^ U------- U - GUAGG
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
Yes
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
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| Bo |
Br |
He |
Ki |
Li |
Ly |
Pa |
Sk |
Sp |
Te |
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| Mature sequence |
Sha-Novel-5_5p |
| mirBase accession | None |
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| Sequence |
0- UUUGGGGGGUGAUCUUGGACAUC -23
Get sequence
|
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| Star sequence |
Sha-Novel-5_3p* |
| mirBase accession | None |
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| Sequence |
36- UGCCAGGAUCUCUCUCUUCAG -57
Get sequence
|
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