MirGeneDB 3.0
MirGeneDB ID

Sko-Mir-2006

Family name MIR-2006 (all species)
Species Saccoglossus (Saccoglossus kowalevskii)
MiRBase ID sko-mir-2006
Paralogues
Orthologues Pfl-Mir-2006  Pmi-Mir-2006  Spu-Mir-2006 
Node of Origin (locus) Ambulacraria
Node of Origin (family) Ambulacraria
Genome context
(Skow_1.1)		 NW_003115458.1: 124730-124786 [+]
Seed AUCGCUA
Precursor
(pre-Mir +30nt flank)		 
UAGGAAUGGAAUUGAAUGCAUGUGCGGUAUCAUCGCUAUCGUGUGUUCUUGUGUGUCUGUACAACAAGCACACUACAUAGCGGUGCUUCCACGCACGUAAAUCUACACCGCUCAUAC
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Structure
        10        20        30          40         50        
UAGGAAUGGAAUUGAAUGC       GUAU--|        C  -    U     GUGUC 
                   AUGUGCG      CAUCGCUAU GU GUGU CUUGU     \
                   UGCACGC      GUGGCGAUA CA CACA GAACA     U
CAUACUCGCCACAUCUAAA       ACCUUC^        -  U    C     ACAUG 
     110       100        90        80         70        60
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17), UGUG in loop
Tissue expression
- +
To
Mature sequence

Sko-Mir-2006_5p
mirBase accessionMIMAT0020047
Sequence 
0- CAUCGCUAUCGUGUGUUCUUGU -22
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Co-mature sequence

Sko-Mir-2006_3p
mirBase accessionMIMAT0020048
Sequence 
35- AAGCACACUACAUAGCGGUGCU -57
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