| MirGeneDB ID | Sma-Novel-1 |
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| Family name |
SMA-NOVEL-1 (all species) |
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| Species |
Blood fluke (Schistosoma mansoni) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
S. mansoni
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| Node of Origin (family) |
S. mansoni
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Genome context
(GCA_000237925.5_SM_V9_genomic) |
HE601624.3: 28064339-28064437 [+]
UCSC
Ensembl
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| Seed |
UCACAGA |
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Precursor
(pre-Mir +30nt flank) |
UCAAUUGAACUACAUUUCUCGUAGUUUUACCUCACAGACUGACCUUAAGUUUAGACAACUAUUGACAAUCAGGAAGCAGCUGUUUCUUGAUUUUCAAUGGUUGUCUAACUUAAGGUCAGUCUGUGAUGUAAAACUAUGAAAAUUCAACAAUUUCCACAA
Get precursor sequence
|
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| Structure | 10 20 30 40 50 60 70
UCAAUUGAACUACAUUUC--| C UAGACAACUAUUGACAAUCAGGAAGCA
UCGUAGUUUUAC UCACAGACUGACCUUAAGUU \
AGUAUCAAAAUG AGUGUCUGACUGGAAUUCAA G
AACACCUUUAACAACUUAAA^ U UCUGUUGGUAACUUUUAGUUCUUUGUC
150 140 130 120 110 100 90 80 |
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| Deep sequencing |
Go to detailed chart
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| 3' NTU |
No
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
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Ce |
Ce |
Ce |
Eg |
Eg |
Eg |
Eg |
Eg |
Eg |
Mi |
Mi |
Sc |
Sc |
Sc |
Sm |
Sm |
Sp |
Sp |
Sp |
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| Mature sequence |
Sma-Novel-1_5p |
| mirBase accession | None |
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| Sequence |
0- CUCACAGACUGACCUUAAGUU -21
Get sequence
|
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| Co-mature sequence |
Sma-Novel-1_3p |
| mirBase accession | None |
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| Sequence |
78- CUUAAGGUCAGUCUGUGAUGU -99
Get sequence
|
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