| MirGeneDB ID | Sme-Mir-2179 |
|---|
| Family name |
MIR-2179 (all species) |
|---|
| Species |
Freshwater planarian (Schmidtea mediterranea) |
|---|
| MiRBase ID |
sme-mir-2179
|
|---|
| Paralogues |
|
|---|
| Orthologues |
|
|---|
| Node of Origin (locus) |
S. mediterranea
|
|---|
| Node of Origin (family) |
S. mediterranea
|
|---|
Genome context
(Sme_GCA_002600895.1_ASM260089v1_alt) |
NNSW01000239_dd_Smes_g4_239: 274382-274440 [+]
UCSC
Ensembl
|
|---|
| Seed |
GACUAUA |
|---|
Precursor
(pre-Mir +30nt flank) |
UCUGAAAACUCAUACUAAGUCUAUUUGUAUUGCAAAAAUAUUUAUAUUUAACUCAUUUCUCUAAAUGAGACUAUAGAGAUUUUUGCUAUGCAUUAGGCUGGAGCCGUCAACUACUUUCG
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
UCUGAAAACUCAUACUA---| UU U A UUUAA UUUC
AGUCUA UGUAU GCAAAAAU UUUAUA CUCA U
UCGGAU ACGUA CGUUUUUA AGAUAU GAGU C
GCUUUCAUCAACUGCCGAGG^ U- U G CA--- AAAU
110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17) |
|---|
Tissue expression
|
| Ag |
Ag |
Di |
Gf |
Ne |
Ph |
Se |
Se |
Se |
Se |
Se |
Se |
Se |
Se |
Se |
Se |
Se |
Wh |
Wh |
Wh |
| |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|---|
| Star sequence |
Sme-Mir-2179_5p* |
| mirBase accession | MIMAT0012166 |
|---|
| Sequence |
0- UGCAAAAAUAUUUAUAUUUAACUCA -25
Get sequence
|
|---|
| Mature sequence |
Sme-Mir-2179_3p |
| mirBase accession | MIMAT0011281 |
|---|
| Sequence |
37- AGACUAUAGAGAUUUUUGCUAU -59
Get sequence
|
|---|
