| MirGeneDB ID | Sme-Mir-87-o11 |
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| Family name |
MIR-87 (all species) |
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| Species |
Freshwater planarian (Schmidtea mediterranea) |
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| MiRBase ID |
sme-mir-87d
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| Paralogues |
Sme-Mir-87-o8
Sme-Mir-87-o9
Sme-Mir-87-o10
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| Orthologues |
Gsp-Mir-87
Sne-Mir-87
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| Node of Origin (locus) |
S. mediterranea
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| Node of Origin (family) |
Protostomia
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Genome context
(Sme_GCA_002600895.1_ASM260089v1_alt) |
NNSW01000320_dd_Smes_g4_320: 69423-69485 [-]
UCSC
Ensembl
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| Seed |
UGAGCAA |
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Precursor
(pre-Mir +30nt flank) |
UUGUCCAUUUUACAUUGUUUUAGAAUUAUAAUGUCUUAUAUUUUGCUAUUAUCAUUGUUUCAAUGAAAAUGGUGAGCAAAGUUUAAGACAUUCAUAUUUUGAAAUUUUCUUCCUUGAAAAUAA
Get precursor sequence
|
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| Structure | 10 20 30 40 50 60
UUGUCCAUUUUACAUUG--| UAU U AU UUGUUUC
UUUUAGAAU AAUGUCUUA AUUUUGCU UAUCA \
AAAGUUUUA UUACAGAAU UGAAACGA GUGGU A
AAUAAAAGUUCCUUCUUUU^ UAC U -- AAAAGUA
120 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
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| 3' NTU |
No
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
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| Ag |
Ag |
Di |
Gf |
Ne |
Ph |
Se |
Se |
Se |
Se |
Se |
Se |
Se |
Se |
Se |
Se |
Se |
Wh |
Wh |
Wh |
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| Star sequence |
Sme-Mir-87-o11_5p* |
| mirBase accession | MIMAT0012136 |
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| Sequence |
0- AUGUCUUAUAUUUUGCUAUUAUCA -24
Get sequence
|
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| Mature sequence |
Sme-Mir-87-o11_3p |
| mirBase accession | MIMAT0011235 |
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| Sequence |
41- GUGAGCAAAGUUUAAGACAUUC -63
Get sequence
|
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