| MirGeneDB ID | Sne-Novel-3 |
|---|
| Family name |
SNE-NOVEL-3 (all species) |
|---|
| Species |
Seison (Seison nebaliae) |
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| MiRBase ID |
|
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| Paralogues |
|
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| Orthologues |
|
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| Node of Origin (locus) |
S. nebaliae
|
|---|
| Node of Origin (family) |
S. nebaliae
|
|---|
Genome context
(S.nebaliae-strainB-GA2.2-3295Contigs_manual) |
k141_1823: 16095-16213 [-]
Ensembl
|
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| Seed |
UGUAUCA |
|---|
Precursor
(pre-Mir +30nt flank) |
CUAUGAUUAUAAAAAUAUCUUGUUGACAUUAUGUAUCAGUAGCACAGGCGUUAUCUAUAACCCAGUGUAAGGGGAUUAUUACACAAUACCUAAUACCUAAUAUCCUCUUACAAUGCGUUAUAGAUAACGCCUGUGCGAUUGAUACAUAUUUUCAUAAUAAUAUGAACGAAAUGUCAAUU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60 70 80
CUAUGAUUAUAAAAAUAUCUUGU--| CAU A UAUCUAUAACCCAGUGUAAGGGGAUUAUUACACAAUA
UGA UAUGUAUCAGU GCACAGGCGU \
ACU AUACAUAGUUA CGUGUCCGCA C
UUAACUGUAAAGCAAGUAUAAUAAU^ UUU G AUAGAUAUUGCGUAACAUUCUCCUAUAAUCCAUAAUC
170 160 150 140 130 120 110 100 90 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | No |
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Tissue expression
|
|
|---|
| Mature sequence |
Sne-Novel-3_5p |
| mirBase accession | None |
|---|
| Sequence |
0- AUGUAUCAGUAGCACAGGCGU -21
Get sequence
|
|---|
| Star sequence |
Sne-Novel-3_3p* |
| mirBase accession | None |
|---|
| Sequence |
98- GCCUGUGCGAUUGAUACAUAU -119
Get sequence
|
|---|
