| MirGeneDB ID | Spt-Mir-129-P4 |
|---|---|
| Family name | MIR-129 (all species) |
| Species | Tuatara (Sphenodon punctatus) |
| MiRBase ID | |
| Paralogues | Spt-Mir-129-P1 Spt-Mir-129-P2 |
| Orthologues | Aca-Mir-129-P4 Ami-Mir-129-P4 Cmi-Mir-129-P4 Gja-Mir-129-P4 Lch-Mir-129-P4 Mun-Mir-129-P4 Pbv-Mir-129-P4 Sto-Mir-129-P4 Xla-Mir-129-P4 |
| Node of Origin (locus) | Gnathostomata |
| Node of Origin (family) | Chordata |
| Genome context (GCA_003113815.1_ASM311381v1_TUATARA) |
QEPC01005124.1: 479208-479272 [+] UCSC Ensembl |
| Seed | UUUUUGC |
| Precursor (pre-Mir +30nt flank) |
GCAGCUUCCCGAGGAAGGUCUUCUCUGGGUCUUUUUGCGGUUUGGGCUUUCUGGGGGUCCCCCCCGUGUCAGAAAGCCCUUACCCCAAAAAGCACCCGGGGCAGCACAAUGCCGUCGCUGGAGCAGet precursor sequence |
| Structure | 10 20 30 40 50 60 GCAGCUUCCCGAGGAAG- - U -| C UU UGGGGGUCC GU CU CUCUGGGU CUUUUUG GGU GGGCUUUC C CA GA GGGGCCCA GAAAAAC CCA CCCGAAAG C ACGAGGUCGCUGCCGUAA C C C^ C UU ACUGUGCCC 120 110 100 90 80 70 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | CNNC at 3p(+17) |
| Mature sequence | Spt-Mir-129-P4_5p (predicted) |
| mirBase accession | None |
| Sequence |
0- CUUUUUGCGGUUUGGGCUUUC -21
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|
| Star sequence | Spt-Mir-129-P4_3p* (predicted) |
| mirBase accession | None |
| Sequence |
43- AAGCCCUUACCCCAAAAAGCAC -65
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|
