| MirGeneDB ID | Tca-Mir-11622 |
|---|
| Family name |
MIR-11622 (all species) |
|---|
| Species |
Red flour beetle (Tribolium castaneum) |
|---|
| MiRBase ID |
tca-mir-11622
|
|---|
| Paralogues |
|
|---|
| Orthologues |
|
|---|
| Node of Origin (locus) |
T. castaneum
|
|---|
| Node of Origin (family) |
T. castaneum
|
|---|
Genome context
(Tcas5.2) |
LG3: 1789933-1789990 [-]
Ensembl
|
|---|
| Seed |
AAAGGAA |
|---|
Precursor
(pre-Mir +30nt flank) |
CUACAAAAUAAAUUACUAAAUCAGUUGAUGUAAAGGAAUUGCAGGAUUGAAAUGUCUGCAGCGUUUUAGUCUUGUAAAUUCCUUUGGGUUUACUGAUAAAAAAGGGGGUGAUGGGUCU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
CUACAAAAUAAAUUACUAA-- U G -| UGUCU
AUCAGU GAU UAAAGGAA UUGCAGGAUUGAAA \
UAGUCA UUG GUUUCCUU AAUGUUCUGAUUUU G
UCUGGGUAGUGGGGGAAAAAA U G A^ GCGAC
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | UGUG in loop |
|---|
Tissue expression
|
| Ad |
Ea |
Em |
Em |
Em |
Em |
Em |
Fe |
Fe |
Fe |
Fe |
Oo |
| |
|
|
|
|
|
|
|
|
|
|
|
|
|---|
| Mature sequence |
Tca-Mir-11622_5p |
| mirBase accession | MIMAT0045517 |
|---|
| Sequence |
0- UAAAGGAAUUGCAGGAUUGAAA -22
Get sequence
|
|---|
| Star sequence |
Tca-Mir-11622_3p* |
| mirBase accession | MIMAT0045518 |
|---|
| Sequence |
35- UUAGUCUUGUAAAUUCCUUUGGG -58
Get sequence
|
|---|
