| MirGeneDB ID | Tgu-Mir-1729 |
|---|
| Family name |
MIR-1729 (all species) |
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| Species |
Zebra finch (Taeniopygia guttata) |
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| MiRBase ID |
tgu-mir-1729
|
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| Paralogues |
|
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| Orthologues |
Cli-Mir-1729
Gga-Mir-1729
|
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| Node of Origin (locus) |
Neognathae
|
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| Node of Origin (family) |
Neognathae
|
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Genome context
(TaeGut1_add) |
15: 6583448-6583510 [+]
UCSC
Ensembl
|
|---|
| Seed |
UCCCUUA |
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Precursor
(pre-Mir +30nt flank) |
AGCCUCUUUGGUAGACAGGCCUGAUCCUGCAUCCCUUACUCACGUGAGCAGUCGUCUCUAUGUCAAAGGGACUACUCGGUGAGUAAGGAUCGCAGGAUUGGGACCACUACCUGUAACUUAAAC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
AGCCUCUUUGGUAGACA- - UG -| C G C GUCUCUA
GG CC AUCCUGC AUCC UUACUCAC UGAG AGUC U
CC GG UAGGACG UAGG AAUGAGUG GCUC UCAG G
CAAAUUCAAUGUCCAUCA A GU C^ - - A GGAAACU
120 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
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| Motifs | No |
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Tissue expression
|
|
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| Mature sequence |
Tgu-Mir-1729_5p |
| mirBase accession | MIMAT0014467 |
|---|
| Sequence |
0- AUCCCUUACUCACGUGAGCAGUC -23
Get sequence
|
|---|
| Star sequence |
Tgu-Mir-1729_3p* |
| mirBase accession | MIMAT0026963 |
|---|
| Sequence |
41- CUACUCGGUGAGUAAGGAUCGC -63
Get sequence
|
|---|
