| MirGeneDB ID | Xbo-Novel-1 |
|---|
| Family name |
XBO-NOVEL-1 (all species) |
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| Species |
Xenoturbella (Xenoturbella bocki) |
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| MiRBase ID |
|
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
X. bocki
|
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| Node of Origin (family) |
X. bocki
|
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Genome context
(genome.xe) |
scaffold537: 80030-80088 [+]
UCSC
Ensembl
|
|---|
| Seed |
GAUGACA |
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Precursor
(pre-Mir +30nt flank) |
AACGUGAGAAUAAGAGGACCAUGCCUGAUUCUUUGCCUCAUUUGUCAUGUCAUUCUCCUAAAGGUAAUGAUGACAAGUGAGACAAUGGACCUUGUAUGGCUAUAAACAACGCUAGCAGC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
AACGUGAGAAUAAGAGGA--| CUGA U C UG CUCCU
CCAUGC UUC UUG CUCAUUUGUCA UCAUU \
GGUAUG AGG AAC GAGUGAACAGU AGUAA A
CGACGAUCGCAACAAAUAUC^ UUCC U A -- UGGAA
110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
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| Star sequence |
Xbo-Novel-1_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- CUUUGCCUCAUUUGUCAUGUCAUU -24
Get sequence
|
|---|
| Mature sequence |
Xbo-Novel-1_3p |
| mirBase accession | None |
|---|
| Sequence |
37- UGAUGACAAGUGAGACAAUGGA -59
Get sequence
|
|---|
