| MirGeneDB ID | Xbo-Novel-12 |
|---|
| Family name |
XBO-NOVEL-12 (all species) |
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| Species |
Xenoturbella (Xenoturbella bocki) |
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| MiRBase ID |
|
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
X. bocki
|
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| Node of Origin (family) |
X. bocki
|
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Genome context
(genome.xe) |
scaffold9784: 4290-4351 [-]
UCSC
Ensembl
|
|---|
| Seed |
CACCCUA |
|---|
Precursor
(pre-Mir +30nt flank) |
GGGUGAGCUGGGGGUCCUGAUAGAGUGAGCUGGGGGUCCUGGUAGGGGUGAGCUGAGGGUCCUGGUAGGCUCACCCUACCAGCACCCCCAGCUCACCCUUAUCGAUGCCGCAAGCUUACCCC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
GGGUGAGCUGGGGGUCC- A-| C G UGAGGGU
UGAUAG GUGAGCUGGGGGU CUGGUAGGG UGAGC \
GCUAUU CACUCGACCCCCA GACCAUCCC ACUCG C
CCCCAUUCGAACGCCGUA CC^ C - GAUGGUC
120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
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| Star sequence |
Xbo-Novel-12_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- UGGGGGUCCUGGUAGGGGUGAGC -23
Get sequence
|
|---|
| Mature sequence |
Xbo-Novel-12_3p |
| mirBase accession | None |
|---|
| Sequence |
40- UCACCCUACCAGCACCCCCAGC -62
Get sequence
|
|---|
