| MirGeneDB ID | Xla-Mir-12480-P1 |
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| Family name |
MIR-12480 (all species) |
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| Species |
African clawed frog (Xenopus laevis) |
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| MiRBase ID |
|
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| Paralogues |
Xla-Mir-12480-P2
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| Orthologues |
Xtr-Mir-12480
|
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| Node of Origin (locus) |
X. laevis
|
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| Node of Origin (family) |
Xenopus
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Genome context
(GCF_001663975.1_XLA_v2) |
NC_030738.1: 73110560-73110618 [-]
UCSC
Ensembl
|
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| Seed |
UCCCCUU |
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Precursor
(pre-Mir +30nt flank) |
ACGUUUUCUCGAUGCUUGUGUAGUGGUGCGCUCCCCUUUCAUUAGGAGCGUGCUGUACUGUAAUUGGGCACGUCUAAAGGAAGGGAGCACAUCGCUAGUACUAAUCUCAUUGCGUGUUC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
ACGUUUUCUCGAUGCUU- -| C C A GA GUACU
GUG UAGUGGUG GCUCCC UUUC UUAG GCGUGCU G
CAU AUCGCUAC CGAGGG AAGG AAUC UGCACGG U
CUUGUGCGUUACUCUAAU G^ A - A -- GUUAA
110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | UG at 5p(-14) |
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Tissue expression
|
|
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| Mature sequence |
Xla-Mir-12480-P1_5p |
| mirBase accession | None |
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| Sequence |
0- CUCCCCUUUCAUUAGGAGCGUGCU -24
Get sequence
|
|---|
| Star sequence |
Xla-Mir-12480-P1_3p* |
| mirBase accession | None |
|---|
| Sequence |
38- CACGUCUAAAGGAAGGGAGCA -59
Get sequence
|
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