| MirGeneDB ID | Xtr-Mir-12477 |
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| Family name |
MIR-12477 (all species) |
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| Species |
Tropical clawed frog (Xenopus tropicalis) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
Mun-Mir-12477
Xla-Mir-12477-P1
Xla-Mir-12477-P2
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| Node of Origin (locus) |
Amphibia
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| Node of Origin (family) |
Amphibia
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Genome context
(xenTro9_add) |
chr5: 86772848-86772905 [+]
UCSC
Ensembl
|
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| Seed |
GAGGCUU |
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Precursor
(pre-Mir +30nt flank) |
ACCCUCAGGAGGAUGCCAUUGGAGCUGCAUUGAGGCUUCCUACUUCAAGGCUGUGUUCUGACUCAUCCUAGAAGCUUGAAGCCUAGCUGCAUCUUCAACAGAGACGCACAGGAAUCUG
Get precursor sequence
|
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| Structure | 10 20 30 40 50
ACCCUCAGGAGGAUGCCA--| C UUG CUA A C UGUU
UUGGAG UGCA AGGCUUC CUUC AGG UG C
AACUUC ACGU UCCGAAG GAAG UCC AC U
GUCUAAGGACACGCAGAGAC^ U CGA UUC A U UCAG
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | UGUG in loop |
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Tissue expression
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| Mature sequence |
Xtr-Mir-12477_5p |
| mirBase accession | None |
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| Sequence |
0- UGAGGCUUCCUACUUCAAGGCUG -23
Get sequence
|
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| Co-mature sequence |
Xtr-Mir-12477_3p |
| mirBase accession | None |
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| Sequence |
35- UCCUAGAAGCUUGAAGCCUAGCU -58
Get sequence
|
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