| MirGeneDB ID | Aca-Mir-5402 |
|---|
| Family name |
MIR-5402 (all species) |
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| Species |
Green anole lizard (Anolis carolinensis) |
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| MiRBase ID |
aca-mir-5402
|
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| Paralogues |
|
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| Orthologues |
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| Node of Origin (locus) |
A. carolinensis
|
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| Node of Origin (family) |
A. carolinensis
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Genome context
(anoCar2) |
GL343894.1: 87890-87947 [+]
UCSC
Ensembl
|
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| Seed |
CUUCUCU |
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Precursor
(pre-Mir +30nt flank) |
GCACAGAAUGAAACAUACCUUUGUGAGUUUUCUUCUCUUGGUCUACAGAUCCGAUGUUUAACCGUUCUGUAGCUCUUGGGACUGAAGAACUUGCAAAGGCACCACACGUUACAACAGU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
GCACAGAAUGAAACAUA-- UG - U-| UU GU UCCGAUG
CCUUUG AG UUUUC UCUC G CUACAGA U
GGAAAC UC AGAAG AGGG C GAUGUCU U
UGACAACAUUGCACACCAC GU A UC^ UU UC UGCCAAU
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | No |
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Tissue expression
|
|
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| Mature sequence |
Aca-Mir-5402_5p |
| mirBase accession | MIMAT0022012 |
|---|
| Sequence |
0- UCUUCUCUUGGUCUACAGAUCC -22
Get sequence
|
|---|
| Star sequence |
Aca-Mir-5402_3p* |
| mirBase accession | MIMAT0022013 |
|---|
| Sequence |
34- UUCUGUAGCUCUUGGGACUGAAGA -58
Get sequence
|
|---|
