Mir-279-P25

MirGeneDB ID

Aga-Mir-279-P25

Family name

MIR-279 (all species)

Species

African malaria mosquito (Anopheles gambiae)

MiRBase ID

aga-mir-2945

Paralogues

Aga-Mir-279-P1a Aga-Mir-279-P1b Aga-Mir-279-P2 Aga-Mir-279-P3

Orthologues

Aae-Mir-279-P25 Agr-Mir-279 Asu-Mir-279-o25 Bpl-Mir-279 Eba-Mir-279 Egr-Mir-279 Esc-Mir-279 Gsa-Mir-279 Gsp-Mir-279 Hru-Mir-279 Isc-Mir-279 Lgi-Mir-279 Lhy-Mir-279 Llo-Mir-279 Mgi-Mir-279 Mom-Mir-279 Npo-Mir-279 Obi-Mir-279 Ovu-Mir-279 Pau-Mir-279 Pcr-Mir-279 Pve-Mir-279 Rph-Mir-279 Sma-Mir-279 Sne-Mir-279

Node of Origin (locus)

Culicidae

Node of Origin (family)

Protostomia

Genome context
(GCF_943734735.2_idAnoGambNW_F1_1_genomic)

NC_064602.1: 10240546-10240611 [-] Ensembl

Clustered miRNAs
(< 50kb from Mir-279-P25)

Mir-10-P3 NC_064602.1: 10196013-10196074 [-] Ensembl
Let-7 NC_064602.1: 10196556-10196618 [-] Ensembl
Mir-10-P2 NC_064602.1: 10200512-10200575 [-] Ensembl
Mir-279-P25 NC_064602.1: 10240546-10240611 [-] Ensembl

Seed

GACUAGA

Precursor
(pre-Mir +30nt flank)

UGUAAUGUAACUCAUCAACUGUCCGUCCCGAGCGAGUCUGCACUCUGGAAUAACAUGUCGGAUUCGUAUACUCAUGACUAGAGGCAGACUCGUUUGGGAAGGAUGGUACCCGUUCGUCGCUUAUCG

Get precursor sequence

Structure

        10          20        30        40        50        60     
UGUAAUGUAACUCAUCA--|      G                A      AAUAA    UCGGAUU 
                   ACUGUCC UCCCGAGCGAGUCUGC CUCUGG     CAUG       \
                   UGGUAGG AGGGUUUGCUCAGACG GAGAUC     GUAC       C
GCUAUUCGCUGCUUGCCCA^      A                -      A----    UCAUAUG 
    120       110       100        90         80            70