MirGeneDB 3.0
MirGeneDB ID

Ami-Mir-1641

Family name MIR-1641 (all species)
Species American alligator (Alligator mississippiensis)
MiRBase ID ami-mir-1641
Paralogues
Orthologues Cli-Mir-1641  Gga-Mir-1641  Tgu-Mir-1641 
Node of Origin (locus) Archosauria
Node of Origin (family) Archosauria
Genome context
(GCF_000281125.3_ASM28112v4_AMI_add)		 NW_017713592.1: 17046845-17046903 [-] UCSC
Seed GGGGAUU
Precursor
(pre-Mir +30nt flank)		 
GUAAUAACAACCUCAAUGCAGGGCAUUUCCUGGGGAUUAAUGACUGUCUGGGGUCAUCAUCUCCUCCCAGUUAGUUAUUAAUCCCCAGGAAAUACUUUAUACCUUGAUCAUUAUUGCUU
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Structure
        10          20        30        40        50         
GUAAUAACAACCUCAAUGC--|   C                      U     GUCAUC 
                     AGGG AUUUCCUGGGGAUUAAUGACUG CUGGG      \
                     UUUC UAAAGGACCCCUAAUUAUUGAU GACCC      A
UUCGUUAUUACUAGUUCCAUA^   A                      U     UCCUCU 
       110       100        90        80        70        60
Deep sequencing
3' NTU Unknown
MotifsUG at 5p(-14)
Tissue expression
- +
To
Mature sequence

Ami-Mir-1641_5p (predicted)
mirBase accessionMIMAT0038317
Sequence 
0- UGGGGAUUAAUGACUGUCUGGG -22
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Star sequence

Ami-Mir-1641_3p* (predicted)
mirBase accessionNone
Sequence 
37- CAGUUAGUUAUUAAUCCCCAGG -59
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