MirGeneDB 3.0
MirGeneDB ID

Ava-Mir-87-o34

Family name MIR-87 (all species)
Species Bdelloid rotifer (Adineta vaga)
MiRBase ID
Paralogues Ava-Mir-87-o35 
Orthologues Gsp-Mir-87  Sne-Mir-87 
Node of Origin (locus) A. vaga
Node of Origin (family) Protostomia
Genome context
(GCA_021613535.1_ASM2161353v1_AVA)		 CP075494.1: 5671659-5671722 [+] Ensembl
Seed UGAGCAA
Precursor
(pre-Mir +30nt flank)		 
UCCGAUUGAUACUAUCUGCGUUGGUAAUGCACGCCUGAAAUUUUCCUCAAACCUUUGCUUUUAUGUGAAUAGGUGAGCAAAGUUUCAGGUGUAUUGAUCCAACACAUAUUCGUCAUAUUUCAAC
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Structure
        10          20        30        40        50        60  
UCCGAUUGAUACUAUCU--|C     UAAUGC              C   AA    UUGCUUU 
                   G GUUGG      ACGCCUGAAAUUUU CUC  ACCU       U
                   C CAACC      UGUGGACUUUGAAA GAG  UGGA       A
CAACUUUAUACUGCUUAUA^A     UAGUUA              C   --    UAAGUGU 
  120       110       100        90        80          70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
- +
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Star sequence

Ava-Mir-87-o34_5p*
mirBase accessionNone
Sequence 
0- ACGCCUGAAAUUUUCCUCAAACCU -24
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Mature sequence

Ava-Mir-87-o34_3p
mirBase accessionNone
Sequence 
42- GUGAGCAAAGUUUCAGGUGUAU -64
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