| MirGeneDB ID | Ava-Mir-87-o35 |
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| Family name |
MIR-87 (all species) |
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| Species |
Bdelloid rotifer (Adineta vaga) |
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| MiRBase ID |
|
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| Paralogues |
Ava-Mir-87-o34
|
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| Orthologues |
Gsp-Mir-87
Sne-Mir-87
|
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| Node of Origin (locus) |
A. vaga
|
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| Node of Origin (family) |
Protostomia
|
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Genome context
(GCA_021613535.1_ASM2161353v1_AVA) |
CP075495.1: 14830059-14830122 [-]
Ensembl
|
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| Seed |
UGAGCAA |
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Precursor
(pre-Mir +30nt flank) |
UUCUAUCAUAUUAAUAAACGUUGGUAAUGCACGCCUGAAAUUUUUCUCAAACCUUUGAUCUUAUAUGAAUAGGUGAGCAAAGUUUCAGGUGUAUUGAUCCAACACAUUCUCUUCAGUUAUUGAA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
UUCUAUCAUAUUAAUAAAC--| UAAUGC U AA UUGAUCU
GUUGG ACGCCUGAAAUUUU CUC ACCU U
CAACC UGUGGACUUUGAAA GAG UGGA A
AAGUUAUUGACUUCUCUUACA^ UAGUUA C -- UAAGUAU
120 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
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| Star sequence |
Ava-Mir-87-o35_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- ACGCCUGAAAUUUUUCUCAAACCU -24
Get sequence
|
|---|
| Mature sequence |
Ava-Mir-87-o35_3p |
| mirBase accession | None |
|---|
| Sequence |
42- GUGAGCAAAGUUUCAGGUGUAU -64
Get sequence
|
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