| MirGeneDB ID | Bfl-Mir-4861 |
|---|
| Family name |
MIR-4861 (all species) |
|---|
| Species |
Florida lancelet (Branchiostoma floridae) |
|---|
| MiRBase ID |
bfl-mir-4861
|
|---|
| Paralogues |
|
|---|
| Orthologues |
Bla-Mir-4861
|
|---|
| Node of Origin (locus) |
Branchiostoma
|
|---|
| Node of Origin (family) |
Branchiostoma
|
|---|
Genome context
(GCF_000003815.2_Bfl_VNyyK_genomic) |
NC_049984.1: 8835182-8835242 [+]
UCSC
|
|---|
| Seed |
UUUACGU |
|---|
Precursor
(pre-Mir +30nt flank) |
CGGAAAAGGUGGAUCUGCUCACAGACGAUGAGCCAAUGCGGCAUGUAAAAGGCUAAAAACGUUCUGUGUCUUUACGUGCCACAUUGUCUCCUUGUCUGCUGUGCUUAAGCAUCGAUGGAAU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
CGGAAAAGGUGGAUCUG- U -| U C C A UAAAAA
C CA CAGACGA GAG CAAUG GGCAUGUAAA GGC C
G GU GUCUGUU CUC GUUAC CCGUGCAUUU CUG G
UAAGGUAGCUACGAAUUC U C^ C U A - UGUCUU
. 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | No |
|---|
Tissue expression
|
|
|---|
| Star sequence |
Bfl-Mir-4861_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- AGCCAAUGCGGCAUGUAAAAGGC -23
Get sequence
|
|---|
| Mature sequence |
Bfl-Mir-4861_3p |
| mirBase accession | MIMAT0020090 |
|---|
| Sequence |
39- CUUUACGUGCCACAUUGUCUCC -61
Get sequence
|
|---|
