| MirGeneDB ID | Bfl-Mir-4871 |
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| Family name |
MIR-4871 (all species) |
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| Species |
Florida lancelet (Branchiostoma floridae) |
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| MiRBase ID |
bfl-mir-4871
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| Paralogues |
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| Orthologues |
Bla-Mir-4871
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| Node of Origin (locus) |
Branchiostoma
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| Node of Origin (family) |
Branchiostoma
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Genome context
(GCF_000003815.2_Bfl_VNyyK_genomic) |
NW_023365955.1: 83221-83283 [-]
UCSC
|
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| Seed |
UUGGCAC |
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Precursor
(pre-Mir +30nt flank) |
UUGAAGACUCAAGUGUUCCACCUGCUGAACUCUGAAGUACCUGUUGCCAAAGGCGCUCAUAGUGACAAACCUUUGGCACUGGUACUUUGGAGUAAAGAUGGUGACAAUUCAUCUCAUCUGCAG
Get precursor sequence
|
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| Structure | 10 20 30 40 50 60
UUGAAGACUCAAGUGUUC--| UG GA UG U U CGCUCAU
CACC CU ACUC AAGUACC GU GCCAAAGG A
GUGG GA UGAG UUCAUGG CA CGGUUUCC G
GACGUCUACUCUACUUAACA^ UA AA GU U - AAACAGU
120 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
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| Star sequence |
Bfl-Mir-4871_5p* |
| mirBase accession | MIMAT0020112 |
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| Sequence |
0- UCUGAAGUACCUGUUGCCAAAGG -23
Get sequence
|
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| Mature sequence |
Bfl-Mir-4871_3p |
| mirBase accession | MIMAT0020113 |
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| Sequence |
41- UUUGGCACUGGUACUUUGGAGU -63
Get sequence
|
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