| MirGeneDB ID | Bla-Mir-4871 |
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| Family name |
MIR-4871 (all species) |
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| Species |
European lancelet (Branchiostoma lanceolatum) |
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| MiRBase ID |
|
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| Paralogues |
|
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| Orthologues |
Bfl-Mir-4871
|
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| Node of Origin (locus) |
Branchiostoma
|
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| Node of Origin (family) |
Branchiostoma
|
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Genome context
(BraLan2) |
Sc0000001: 4527408-4527470 [+]
Ensembl
|
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| Seed |
UUGGCAC |
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Precursor
(pre-Mir +30nt flank) |
UUGAAGUCUUCAGUGUUCCACCUGCUGAACUCUGAAGUACCUGUUGCCAAAGGCGCUCACACUGACAAACCUUUGGCACUGGUACUUUGGAGUAAAGAUGGUGACCAUACAUCACAGCUGCUG
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
UUGAAGUCUUCAGUGUUC--| UG GA UG U U CGCUCAC
CACC CU ACUC AAGUACC GU GCCAAAGG A
GUGG GA UGAG UUCAUGG CA CGGUUUCC C
GUCGUCGACACUACAUACCA^ UA AA GU U - AAACAGU
120 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
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| Star sequence |
Bla-Mir-4871_5p* |
| mirBase accession | None |
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| Sequence |
0- UCUGAAGUACCUGUUGCCAAAGG -23
Get sequence
|
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| Mature sequence |
Bla-Mir-4871_3p |
| mirBase accession | None |
|---|
| Sequence |
41- UUUGGCACUGGUACUUUGGAGU -63
Get sequence
|
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