| MirGeneDB ID | Bko-Mir-12602 |
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| Family name |
MIR-12602 (all species) |
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| Species |
Monogonont Rotifer 2 (Brachionus koreanus) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
Bpl-Mir-12602
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| Node of Origin (locus) |
Brachionus
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| Node of Origin (family) |
Brachionus
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Genome context
(Brachionus_koreanusGCA_016987375.1_Bk_v0.5.4_genomic) |
PJRA01000313.1: 1985619-1985679 [-]
Ensembl
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| Seed |
UUCACAA |
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Precursor
(pre-Mir +30nt flank) |
AAUUUAAAUUUACUUAUACUUAAUAUUACUAUGCUUCUCUUGUUGUGCAAAAUCUUGAAUUGAACUGAUUUCACAAUAGAGAGUAGCAUAGUAGAAUUAAGAAGAUAUCGUCAAAAUACUC
Get precursor sequence
|
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| Structure | 10 20 30 40 50 60
AAUUUAAAUUUACUUAUA-- A U -| CA UUGAA
CUUAAU UUACUAUGCU CUCU UGUUGUG AAAUC U
GAAUUA GAUGAUACGA GAGA AUAACAC UUUAG U
CUCAUAAAACUGCUAUAGAA A U G^ -- UCAAG
. 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
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| Comment | The 3' end of the 5p arm may be monouridylated. |
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| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
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| Star sequence |
Bko-Mir-12602_5p* |
| mirBase accession | None |
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| Sequence |
0- AUGCUUCUCUUGUUGUGCAAAAUC -24
Get sequence
|
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| Mature sequence |
Bko-Mir-12602_3p |
| mirBase accession | None |
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| Sequence |
38- UUUCACAAUAGAGAGUAGCAUAG -61
Get sequence
|
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