MirGeneDB 3.0
MirGeneDB ID

Bla-Mir-12494-P1

Family name MIR-12494 (all species)
Species European lancelet (Branchiostoma lanceolatum)
MiRBase ID
Paralogues Bla-Mir-12494-P2a  Bla-Mir-12494-P2b  Bla-Mir-12494-P3  Bla-Mir-12494-P4  Bla-Mir-12494-P5 
Orthologues Bfl-Mir-12494 
Node of Origin (locus) B. lanceolatum
Node of Origin (family) Branchiostoma
Genome context
(BraLan2)		 Sc0000025: 2400435-2400490 [+] Ensembl
Clustered miRNAs
(< 50kb from Mir-12494-P1)		 Mir-12494-P1 Sc0000025: 2400435-2400490 [+] Ensembl
Mir-12494-P2a Sc0000025: 2400930-2400989 [+] Ensembl
Mir-12494-P3 Sc0000025: 2401083-2401144 [+] Ensembl
Mir-12494-P4 Sc0000025: 2401442-2401501 [+] Ensembl
Mir-12494-P2b Sc0000025: 2401852-2401911 [+] Ensembl
Mir-12494-P5 Sc0000025: 2402035-2402096 [+] Ensembl
Seed UCCGUGG
Precursor
(pre-Mir +30nt flank)		 
AAAUCUGACUAGCUAUAGACCACGACAAGAAUCCGUGGUAGUUAUGGCCAUGUUUUAAAGGUUCAUGGUCUAAUUUCCAUGGAUUCCUGUUGGAUCUCUUGCCAACAACAAGAACA
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Structure
        10           20        30        40        50        
AAAUCUGACUAGCUAUA---| CCA     A          U     U       UUUUA 
                    GA   CGACA GAAUCCGUGG AGUUA GGCCAUG     \
                    CU   GUUGU CUUAGGUACC UUAAU CUGGUAC     A
ACAAGAACAACAACCGUUCU^ AG-     C          U     -       UUGGA 
    110       100         90        80         70        60
Deep sequencing
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3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
- +
Ad Ad Em Em Em Em
Mature sequence

Bla-Mir-12494-P1_5p
mirBase accessionNone
Sequence 
0- AUCCGUGGUAGUUAUGGCCAUG -22
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Star sequence

Bla-Mir-12494-P1_3p* (predicted)
mirBase accessionNone
Sequence 
35- UGGUCUAAUUUCCAUGGAUUC -56
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