| MirGeneDB ID | Bla-Mir-92-o7 |
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| Family name |
MIR-92 (all species) |
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| Species |
European lancelet (Branchiostoma lanceolatum) |
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| MiRBase ID |
|
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| Paralogues |
Bla-Mir-92-o1
Bla-Mir-92-o2
Bla-Mir-92-o3
Bla-Mir-92-o4
Bla-Mir-92-o5
Bla-Mir-92-o6
Bla-Mir-92-o8
|
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| Orthologues |
Asu-Mir-92
Bfl-Mir-92-o7
Cel-Mir-92
Dan-Mir-92-P7
Dme-Mir-92-P7
Dsi-Mir-92-P7
Dya-Mir-92-P7
Esc-Mir-92
Gsp-Mir-92
Hmi-Mir-92
Isc-Mir-92
Obi-Mir-92
Sme-Mir-92
|
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| Node of Origin (locus) |
Branchiostoma
|
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| Node of Origin (family) |
Bilateria
|
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Genome context
(BraLan2) |
Sc0000030: 2297031-2297088 [-]
Ensembl
|
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| Seed |
AAGGCAA |
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Precursor
(pre-Mir +30nt flank) |
GGUGUAUGAACACUUCUGUUGGACCCCCUUCAAGGCAAAUAGCUGCAAUCCUUUAUAUUUAUCAAGUAUUGCACUUUUUUGCUUUGAAAGGUGUUUUGACAUUUCCAUCAUUCCAGUA
Get precursor sequence
|
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| Structure | 10 20 30 40 50
GGUGUAUGAACACUUCU- UG - C C U-| C C UUAUA
GU G AC CC UUCAAGGCAAA AG UGCAAU CU U
CA U UG GG AAGUUUCGUUU UC ACGUUA GA U
AUGACCUUACUACCUUUA GU U U A UU^ - U ACUAU
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| Comment | It is not clear either from phylogenetic or syntenic information how many Mir-92 genes were present in the last common ancestor of bilaterians and how the vertebrate Mir-92s relate to the invertebrate Mir-92s and thus these multiple paralogues in invertebrates are classified here as orphans pending new data. |
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| 3' NTU |
No
|
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| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
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Tissue expression
|
|
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| Mature sequence |
Bla-Mir-92-o7_5p |
| mirBase accession | None |
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| Sequence |
0- CAAGGCAAAUAGCUGCAAUCCU -22
Get sequence
|
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| Star sequence |
Bla-Mir-92-o7_3p* |
| mirBase accession | None |
|---|
| Sequence |
36- UAUUGCACUUUUUUGCUUUGAA -58
Get sequence
|
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