| MirGeneDB ID | Bpl-Mir-12594 |
|---|
| Family name |
MIR-12594 (all species) |
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| Species |
Monogonont Rotifer 1 (Brachionus plicatilis) |
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| MiRBase ID |
|
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| Paralogues |
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| Orthologues |
Ava-Mir-12594-P1
Ava-Mir-12594-P2
Bko-Mir-12594
Sne-Mir-12594
|
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| Node of Origin (locus) |
Rotifera
|
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| Node of Origin (family) |
Rotifera
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Genome context
(Bpl_ASM1027981) |
QEOQ01000206.1: 1063707-1063776 [+]
Ensembl
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| Seed |
UAUCAGU |
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Precursor
(pre-Mir +30nt flank) |
AAUUGUCGAACUCAAUACUGAGACUUGUUCCAGUGGUACAGCGCUGAUUAACAGUUGUAAUAUGCUGACUAAUUUCUGUAUCAGUAGCUCUACUACUGAAUCAAGCUCAGUUCUGAUCAUCUUAUCGGCA
Get precursor sequence
|
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| Structure | 10 20 30 40 50 60
AAUUGUCGAACUCAAUA---| A UUC C - UA UUGUAAUAUG
CUGAG CUUG CAGUGGUA AGC GCUGAU ACAG \
GACUC GAAC GUCAUCAU UCG UGACUA UGUC C
ACGGCUAUUCUACUAGUCUU^ - UAA C A -- UUUAAUCAGU
. 120 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
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| Star sequence |
Bpl-Mir-12594_5p* (predicted) |
| mirBase accession | None |
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| Sequence |
0- CAGUGGUACAGCGCUGAUUAACAG -24
Get sequence
|
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| Mature sequence |
Bpl-Mir-12594_3p |
| mirBase accession | None |
|---|
| Sequence |
47- GUAUCAGUAGCUCUACUACUGAA -70
Get sequence
|
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