MirGeneDB 3.0
MirGeneDB ID

Bpl-Mir-12599-P1a

Family name MIR-12599 (all species)
Species Monogonont Rotifer 1 (Brachionus plicatilis)
MiRBase ID
Paralogues Bpl-Mir-12599-P1b 
Orthologues
Node of Origin (locus) B. plicatilis
Node of Origin (family) Brachionus
Genome context
(Bpl_ASM1027981)		 QEOQ01000670.1: 1235666-1235724 [-] Ensembl
Clustered miRNAs
(< 50kb from Mir-12599-P1a)		 Mir-12598-P2a QEOQ01000670.1: 1229925-1229988 [-] Ensembl
Mir-12598-P3a QEOQ01000670.1: 1230041-1230103 [-] Ensembl
Mir-12599-P1b QEOQ01000670.1: 1230305-1230363 [-] Ensembl
Mir-12598-P1b QEOQ01000670.1: 1230425-1230489 [-] Ensembl
Mir-12598-P2b QEOQ01000670.1: 1235286-1235349 [-] Ensembl
Mir-12598-P3b QEOQ01000670.1: 1235402-1235464 [-] Ensembl
Mir-12599-P1a QEOQ01000670.1: 1235666-1235724 [-] Ensembl
Mir-12598-P1a QEOQ01000670.1: 1235786-1235850 [-] Ensembl
Seed ACUAAAA
Precursor
(pre-Mir +30nt flank)		 
AGUGGAUCAGUGAGUCAACUCGCUUCAGUGCACUAAAAUACGGUAUAGCGGGUAGGUAGUAACGACCGCUGUGCCCUAUUUUAGUACCACUGAACGGGUGCACAGAGCUACGCAAAUUU
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Structure
        10           20        30         40        50        
AGUGGAUCAGUGAGUCA---|    C       C-         C          GUAGGU 
                    ACUCG UUCAGUG  ACUAAAAUA GGUAUAGCGG      A
                    UGGGC AAGUCAC  UGAUUUUAU CCGUGUCGCC      G
UUUAAACGCAUCGAGACACG^    -       CA         C          AGCAAU 
       110       100         90        80        70        60
Deep sequencing
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CommentThe 3' end of the 5p arm may be monouridylated.
3' NTU No
MotifsNo
Tissue expression
- +
To
Mature sequence

Bpl-Mir-12599-P1a_5p
mirBase accessionNone
Sequence 
0- CACUAAAAUACGGUAUAGCGGG -22
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Star sequence

Bpl-Mir-12599-P1a_3p*
mirBase accessionNone
Sequence 
36- CGCUGUGCCCUAUUUUAGUACCA -59
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