MirGeneDB 3.0
MirGeneDB ID

Bta-Mir-421-P1

Family name MIR-421 (all species)
Species Cow (Bos taurus)
MiRBase ID bta-mir-545
Paralogues Bta-Mir-421-P1-v1  Bta-Mir-421-P2 
Orthologues Cfa-Mir-421-P1-v1  Cpo-Mir-421-P1  Dno-Mir-421-P1-v1  Eca-Mir-421-P1-v1  Hsa-Mir-421-P1-v1  Mml-Mir-421-P1-v1  Mmr-Mir-421-P1a  Mmr-Mir-421-P1b  Ocu-Mir-421-P1-v1  Pab-Mir-421-P1 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(GCF_002263795.1_ARS-UCD1.2_BTA)		 NC_037357.1: 76853222-76853281 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-421-P1-v2)		 Mir-374-P1 NC_037357.1: 76853059-76853110 [+] UCSC Ensembl
Mir-421-P1-v1 NC_037357.1: 76853220-76853282 [+] UCSC Ensembl
Mir-421-P1-v2 NC_037357.1: 76853222-76853281 [+] UCSC Ensembl
Variant

Bta-Mir-421-P1-v2
Seed CAGUAAA
Precursor
(pre-Mir +30nt flank)		 
CCAGAGCCCAGCCUGGCACAUUCGUAGGCCUCAGUAAAUGUUUAUUGGAUGAAUAAAUGAAUGGCUCAUCAACAAACAUUUAUUGUGUGCCUGCUAACGUGAUCUCCACAGGCUCUGAAC
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Structure
        10        20           30         40        50         
CCAGAGCCCAGCCUGGCACAUUC---      CU-|           AUUG     AUAAAU 
                          GUAGGC   CAGUAAAUGUUU    GAUGA      \
                          CGUCCG   GUUAUUUACAAA    CUACU      G
CAAGUCUCGGACACCUCUAGUGCAAU      UGU^           CAA-     CGGUAA 
.       110       100        90        80         70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Ad Bo Br Ce Co Co De Fe He Hy Ir Ki La Lo Mi No Op Or Pe Re Su Te
Mature sequence

Bta-Mir-421-P1-v2_5p
mirBase accessionMIMAT0003806
Sequence 
0- UCAGUAAAUGUUUAUUGGAUGA -22
Get sequence
Proposed targets TargetScanVert: bta-miR-545-5p
Star sequence

Bta-Mir-421-P1-v2_3p*
mirBase accessionMIMAT0003807
Sequence 
37- AUCAACAAACAUUUAUUGUGUGC -60
Get sequence
Proposed targets TargetScanVert: bta-miR-545-3p
Variant

Bta-Mir-421-P1-v1
Seed CAACAAA
Precursor
(pre-Mir +30nt flank)		 
CUCCAGAGCCCAGCCUGGCACAUUCGUAGGCCUCAGUAAAUGUUUAUUGGAUGAAUAAAUGAAUGGCUCAUCAACAAACAUUUAUUGUGUGCCUGCUAACGUGAUCUCCACAGGCUCUGAACU
Get precursor sequence
Structure
        10          20        30         40        50        60 
CUCCAGAGCCCAGCCUGG--   A  C      CU-|           AUUG    AAUAAAU 
                    CAC UU GUAGGC   CAGUAAAUGUUU    GAUG       \
                    GUG AA CGUCCG   GUUAUUUACAAA    CUAC       G
UCAAGUCUCGGACACCUCUA   C  U      UGU^           CAA-    UCGGUAA 
 120       110       100        90        80         70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsNo
Tissue expression
- +
Ad Bo Br Ce Co Co De Fe He Hy Ir Ki La Lo Mi No Op Or Pe Re Su Te
Star sequence

Bta-Mir-421-P1-v1_5p*
mirBase accessionMIMAT0003806
Sequence 
0- CCUCAGUAAAUGUUUAUUGGAUG -23
Get sequence
Proposed targets TargetScanVert: bta-miR-545-5p
Mature sequence

Bta-Mir-421-P1-v1_3p
mirBase accessionMIMAT0003807
Sequence 
40- UCAACAAACAUUUAUUGUGUGCC -63
Get sequence
Proposed targets TargetScanVert: bta-miR-545-3p